Content root
In PyCharm, content is a collection of files with which you are currently working, possibly organized in a hierarchy of subfolders. The folder that is the highest in this hierarchy is called the content root folder or content root (shown as 
) for short. A project has at least one content root folder, which by default is the project folder itself.
Having several content roots enables you to work with files from several directories that do not have a common immediate parent. This is helpful when you use static contents, for example, icons. You can just save them all in a folder and then specify this folder as an extra content root in several projects.
Content root types
By default, all the files in a content root folder are involved in indexing, searching, parsing, code completion, and so on. To change this status, folders within a content root can be assigned to the following categories:
Regular content roots, created as described in Configuring Project Structure. These roots are marked
.A content root is a folder that contains the files that make up your project.
SourcesThese roots contain the actual source files and resources. PyCharm uses the source roots as the starting point for resolving imports.
The files under the source roots are interpreted according to their type. PyCharm can parse, inspect, index, and compile the contents of these roots.
ExcludedThese roots contain files and folders ignored by PyCharm when indexing, searching, parsing, watching and so on.
Usually, one would like to exclude temporary build folders, generated output, logs, and other project output. Excluding the unnecessary paths is a good way to significantly improve performance.
Resource Root (PyCharm Professional only)These roots are intended for resource files in your application (images, style sheets, and so on). Files and subfolders in a Resource Root folder can be referenced relative to this folder instead of specifying full paths to them.
Template roots (PyCharm Professional only) contain templates for the various web projects.
Mark directories in the Project tool window
Right-click the desired directory in the Project tool window.
From the context menu, point to Mark Directory As node.
Choose Mark as <directory status>.